| Issue |
A&A
Volume 701, September 2025
|
|
|---|---|---|
| Article Number | A196 | |
| Number of page(s) | 20 | |
| Section | The Sun and the Heliosphere | |
| DOI | https://doi.org/10.1051/0004-6361/202554637 | |
| Published online | 17 September 2025 | |
Fast magneto-acoustic waves in the solar chromosphere: Comparison of single-fluid and two-fluid approximations
1
Instituto de Astrofísica de Canarias, 38205 La Laguna, Tenerife, Spain
2
Departamento de Astrofísica, Universidad de La Laguna, 38205 La Laguna, Tenerife, Spain
3
Department of Physics and Technology, University of Bergen, Bergen, Norway
4
School of Mathematics, Monash University Victoria, 3800 Melbourne, Australia
⋆ Corresponding author.
Received:
19
March
2025
Accepted:
12
July
2025
Context. The mechanism behind the heating of the solar chromosphere remains unclear. Friction between neutrals and charges is expected to contribute to plasma heating in a partially ionised plasma (PIP).
Aims. We aim to study the efficiency of the frictional heating mechanism in partially ionised plasmas by comparing a single-fluid model (1F) using ambipolar diffusion with a two-fluid model (2F) that incorporates elastic collision terms.
Methods. We used the MANCHA-2F code to solve the equations for both models numerically. The simulations involved the vertical propagation of fast magneto-acoustic waves from the top of the photosphere through the chromosphere. The model atmosphere was vertically stratified, including a horizontal, homogeneous magnetic field. We also applied linear theory to supplement the numerical results. Finally, we looked at the assumptions of the 1F model to find out what causes the discrepancies among the models.
Results. The results show that the temperature increase for the 1F model is slightly higher than for the 2F model, especially with long-period waves. The wave energy flux indicates that in the 2F model, the wave is transporting less energy upwards. From linear theory, we find that the wave in the 2F model loses more energy than in the 1F model in the deep layers, but the opposite effect occurs in the high layers.
Conclusions. The efficient dissipation in the 2F model in deep layers reduces the energy flux at high layers, thereby reducing heating, which explains the temperature differences between the models. We attribute those discrepancies to the contribution of pressure forces to the drift velocity and the omission of a term related to the centre of mass frame reference in the 1F energy equation.
Key words: Sun: chromosphere
© The Authors 2025
Open Access article, published by EDP Sciences, under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
This article is published in open access under the Subscribe to Open model. Subscribe to A&A to support open access publication.
1. Introduction
Owing to the relatively cool temperatures in the solar photosphere and chromosphere, the plasma in these layers (primarily consisting of hydrogen) is partially ionised. Moving into the upper layers, the magnetic pressure exceeds the gas pressure and the magnetic field determines the behaviour of charges. Neutral particles can only sense the presence of the magnetic field through collisions with charges. The friction resulting from charge-neutral collisions causes the dissipation of kinetic and magnetic energies, which are then converted into internal energy, raising the plasma temperature. This process becomes more effective when both the magnetohydrodynamic (MHD) and collision timescales are comparable (Zaqarashvili et al. 2011a; Soler et al. 2013a,b; Ballester et al. 2018; Popescu Braileanu & Keppens 2021). Furthermore, Khodachenko et al. (2004, 2006) demonstrated that, under conditions observed in prominences, wave damping resulting from charge-neutral collisions is more pronounced than damping caused by viscosity or thermal conductivity. In addition, Shelyag et al. (2016) found that charge-neutral collisional damping is more efficient than Ohmic dissipation for propagating waves in flux tubes.
Depending on the scales involved, describing the interaction between charges and neutrals might require a model that includes both components as separated fluids. One significant reference with respect to the description of a multi-fluid plasma (N-fluid, or NF) is the seminal paper of Braginskii (Braginskii 1965), among other works (see e.g. Chapman & Cowling 1970; Schunk & Nagy 2009). This approach requires us to computie the moments of the Boltzmann equation for the distribution function of each component of the plasma. The Chapman-Enskog successive-approximation technique calculates the high-order moments of the distribution (Schunk 1977; Meier & Shumlak 2012). Braginskii’s method is applicable to highly collisional plasmas and is valid across most of the chromosphere. For plasmas with intermediate or low collision coupling, a more general model such as the one developed by Hunana et al. (2019) and Hunana et al. (2022) is required. Recently, Hunana (2025) extended Braginskii’s set of equations to a 22-moment model for a 2F plasma composed by neutrals and charges.
When dealing with partially ionised solar plasmas, a common method for simulating the interaction between charged and neutral particles is using a single-fluid model (1F; e.g. Zweibel & Brandenburg 1997; Ballester et al. 2018; Nóbrega-Siverio et al. 2020a). This model includes ambipolar diffusion among other non-ideal terms in the generalised Ohm’s law. Outside of solar physics, it has been used, for example, in simulating neutron stars (Jones 1987), the interstellar medium (Brandenburg 2019), or weakly ionised protoplanetary disks (Bai & Stone 2011). Many numerical studies in solar physics have invoked the ambipolar term. For instance, Cheung & Cameron (2012), Martínez-Sykora et al. (2012) and Khomenko et al. (2018) found ambipolar diffusion to produce measurable effects in magneto-convection simulations, exceeding artificial diffusivities at chromospheric layers. Martínez-Sykora et al. (2016) analysed the misalignment of magnetic field lines with the visible structure of spicules and due to the interaction between charges and neutrals, invalidating the MHD assumption that plasma motion consistently follows the same magnetic field lines. Nóbrega-Siverio et al. (2020b) and Martínez-Sykora et al. (2020a, 2023) found that nonequilibrium (NEQ) conditions may affect the efficiency of ambipolar diffusion. Recently, Gómez-Míguez et al. (2024) incorporated inelastic collisions into ambipolar diffusion term definition, finding the corrections to the ambipolar coefficient to be negligible in quiet Sun conditions. Works by Khodachenko et al. (2004, 2006), Forteza et al. (2006), Song & Vasyliūnas (2011), Soler et al. (2015a), Shelyag et al. (2016), Cally & Khomenko (2019), Khomenko & Cally (2019), and Popescu Braileanu et al. (2021), among others, have investigated the damping of MHD waves and currents due to ambipolar diffusion. They found high-frequency Alfvén and fast waves to be effectively damped through this mechanism in many different scenarios such as quiet Sun, flux tubes, or prominences. However, for the case of slow waves, Forteza et al. (2006) found them to be weakly affected by ion-neutral collisions. Moreover, Terradas et al. (2002, 2005), Carbonell et al. (2006), Forteza et al. (2008), and Soler et al. (2015a) found them to be more affected by other non-ideal mechanisms, such as viscosity or thermal conduction.
In recent years, many NF studies have appeared in the context of Solar physics. In terms of wave theory, Zaqarashvili et al. (2011a, 2013) and Soler et al. (2013a,b) characterised the 2F normal modes in an uniform atmosphere, focussing on the cutoff regions not present in the 1F approach (see e.g. Kulsrud & Pearce 1969; Kamaya & Nishi 1998). Expanding the analysis of 2F waves, Cally (2023) studied the 10 modes resulting from the linear equations applied to a homogeneous atmosphere, focussing on the efficiency in generating those modes and Cally & Gómez-Míguez (2023) applied a ray tracing formalism for the study of fast-to-slow mode conversion in 2F under the assumption of weak dissipation. We refer to the review by Ballester et al. (2018) and Soler (2024) for recent developments in 2F waves.
Regarding numerical simulations, Popescu Braileanu et al. (2019a,b) or Zhang et al. (2021) studied wave heating in a 1D stratified atmosphere for different wave periods, finding the temperature increments to decrease for shorter wave periods. Snow & Hillier (2021) delved into 1D shock propagation, finding neutrals to stabilise the wavefront for finite collisions. Furthermore, Meier (2011), Maneva et al. (2017), Ballai (2019), and Zhang et al. (2021) expanded this research by incorporating ionisation-recombination effects, revealing challenges in configuring a static background atmosphere when hydrostatic equilibrium is imposed. Recently, Snow et al. (2023) also included radiative ionisation-recombination rates for a (5 + 1 levels) hydrogen atom for investigating shock propagation and Popescu Braileanu & Keppens (2024) added radiative cooling under coronal conditions to study the growth of the thermal instability and acoustic wave damping. Apart from 2F modeling, Martínez-Gómez et al. (2017) explored a 5F approach that includes hydrogen and helium, while Martínez-Gómez et al. (2018) used a 3F model to study the non-linear regime of Alfvén waves in a 1D homogeneous atmosphere. In addition, the Ebysus code (Martínez-Sykora et al. 2020b) has been shown to be capable of performing NF simulations for different species, treating ionisation and excitation states separately.
Although NF models offer greater flexibility, make fewer assumptions, and thus offer a more accurate description of chromospheric plasma at small scales, it is still possible that a simpler 1F model is sufficiently precise for application in the chromosphere, depending on the frequency of the studied process. Hence, it is necessary to compare both approaches and verify the applicability of the 1F approach under conditions similar to those of the solar chromosphere. This study aims to enhance our understanding of the heating mechanisms associated with interactions between charged particles and neutrals and to determine the specific scenarios where the 1F approximation becomes less accurate than the more detailed 2F approximation. For this purpose, we employed the MANCHA-2F code developed by Popescu Braileanu et al. (2019a) to solve both the 1F and 2F equations and compare their solutions in a simple scenario involving the vertical propagation of fast magneto-acoustic waves in a solar-like chromospheric model, following the methodology of previous research (e.g. Popescu Braileanu et al. 2019b).
The paper is organised as follows. Section 2 outlines the mathematical models utilised in this study. Section 3 presents the results of the numerical experiments on the propagation of fast magneto-acoustic waves. Section 4 presents the analytical solution for the wave equation. Section 5 analyses the reasons for the 1F and 2F discrepancies. Finally, Section 6 summarises our findings.
2. Physical description of the plasma
In this work, we assume a hydrogen plasma consisting of electrons, protons, and neutral particles, without any other species, molecules, or negative hydrogen ions. We focus only on the effects due to elastic charge-neutral collisions. We do not include inelastic collisions such as ionisation or recombination and we do not consider viscosity or heat flux. By restricting ourselves to a 5-moment model (Schunk 1977), we are able to consistently apply these assumptions in a closed model. We note that Ohmic heating, the Hall effect, or Biermann battery effect are not included in the generalised Ohm’s law.
2.1. The two-fluid (2F) model
Our model follows a 2F approach, where elastic collisions produce a coupling between a neutral fluid with a charge fluid. The neutral fluid has only one component, while the charge fluid consists of strongly coupled protons and electrons. In this instance, we are examining a 2F model comprising charges and neutrals, as established by Meier & Shumlak (2012), Leake et al. (2013), or Popescu Braileanu (2020). The set of moment equations is
where the usual thermodynamic variables
are, respectively, the mass density, the centre of mass velocity, the stress tensor, and the total energy of the fluid α = c, n for charges and neutrals, respectively. We note that the charges include the sum of protons and electrons. The scalar product is denoted by ‘⋅’ and the outer product by ‘⊗’. The total energy is, in each case,
with eint, α the internal energy and the adiabatic index γ = 5/3. Density and pressure obey the ideal gas relations
where
is the scalar pressure, mH the mass of hydrogen atom, kB the Boltzmann constant, and Tα the temperature.
The gravitational acceleration, g, and the magnetic field, B, characterise the macroscopic forces acting on the system. The magnetic force is described throughout the divergence of the magnetic stress tensor,
, defined as
where μ0 is the vacuum magnetic permeability, pm is the magnetic pressure, and
is the 3 × 3 identity tensor. The magnetic force is commonly expressed in terms of the current density,
, so
.
The magnetic field evolves according to the induction equation
and obeys the no monopole condition
The terms Rn and Mn describe the elastic collisional interaction between the fluids (Braginskii 1965). The elastic collision term for the mass equation is null since no particles are produced or destroyed in elastic processes. For the case of a hydrogen plasma, the collisional terms are given by
where α is the collision parameter,
The subindex ‘p’ refers to protons, while mβn = mβmn/(mβ + mn), Teff = (Tc + Tn)/2, and σβn = 10−19 m2 are the cross-sections, assuming hard sphere elastic collisions (Draine et al. 1983; Leake et al. 2012), for β = p, e. Using these definitions, the collision frequencies are
These frequencies define the collision time scales τcn = 1/νcn and τnc = 1/νnc. If the MHD time scale of the studied processes is similar to or smaller than the collision ones, the 2F nature of the plasma arises.
2.2. A single fluid (1F) model with ambipolar diffusion
Following the same notation as in the 2F Section 2.1, the 1F set of equations is expressed as
with the thermodynamical relations,
The amount of neutrals and charges is encapsulated on the mass fraction, ξα, and on the average particle mass,
. In the 1F approach, ambipolar diffusion is included through the generalised Ohm’s law. This effect is present in Eqs. (11c) and (11d) by introducing the non-ideal electric field E* and the Poynting flux S*, which can be expressed as
where we express the ambipolar coefficient as
We also introduced the more usual ambipolar coefficient
and expressed the ambipolar terms in a more standard fashion. However, we made use of the non-standard notation, as explained in the following sections.
The momentum exchange terms in the 2F (see Eq. (7)) and the ambipolar diffusion refer to the same process: the diffusion of neutrals and charges. It is worthwhile to clarify the connection between these two concepts. Here, we follow the steps outlined by, namely, Khomenko et al. (2014).
We consider a 1F model that accounts for velocity drifts between neutrals and charges,
In this approach, the dynamics of the plasma is described by the centre of mass of the components, which moves at the velocity
With the above considerations, we can relate the drift velocity of neutrals and charges respect to the centre of mass, wα, with the drift velocity w, by using Eqs. (15) and (16),
From the inspection of the charge energy equation and the 2F induction equation (see Eqs. (1f) and (5)), it follows that the magnetic field terms are related to the velocity of the charged fluid. The non-ideal terms E* and S* (see Eqs. (13a) and (13b)) result from the change of the charge velocity to the velocity of the centre of mass frame velocity, so
and,
The drift velocity, w, is not a native variable of the 1F model, as it requires us to evolve the velocities for neutrals and charges separately. Therefore, it is necessary to make some assumptions in order to account for the drift velocity. By combining the momentum equations for neutrals and charges (Eqs. (1c) and (1d)), we find
similar to Eq. (129) by Khomenko et al. (2014). The terms on the left hand side (LHS) are the inertial terms, which is approximately expressed as
The ratio between the inertial terms and the collisional momentum exchange term Rn can be roughly estimated by
with ω as the characteristic frequency of the process.
If ϖinertia ≪ 1, the inertial terms can be neglected in Eq. (20), then
The first term on the right-hand side (RHS) of Eq. (23) is the drift velocity due to magnetic forces, which is usually referred to as ambipolar diffusion (see also the discussion by Nóbrega-Siverio et al. 2020a). This contribution is included in the 1F model presented here through the terms E* and S* (see Eqs. (13a) and (13b)). The second one is the thermal pressure function, given by
which describes the drift due to the thermal pressure forces. In the absence of viscosity and assuming thermal equilibrium (Tn = Tc) and scalar pressures, it can be reduced to
which is equivalent to the expression obtained by Forteza et al. (2006). In principle, we ignore this term in the 1F approach, since we study a weakly ionised atmosphere and G → 0 in both the limits of weak and strong ionisation (see the discussion by Khodachenko et al. 2004, 2006; Pinto et al. 2008). Additionally, in Eq. (23), there is a missing term proportional to the current density and to the electron mass (see e.g. Braginskii 1965; Khomenko et al. 2014; Benavides & Flierl 2020). This term comes from the drift velocity between ions and electrons and it is neglected in the 2F model discussed in this work (for more details, see the model decription by Popescu Braileanu 2020).
2.3. Internal energy equation
The energy equation can be cast in several alternative forms, showing explicitly different physical properties of the system. The internal energy equation is specially useful because it is connected with the temperature throughout the state equation. In Equations (1e), (1f) and (11c), it is possible to remove the explicit contribution of the kinetic and magnetic energy by using the momentum and induction equations, obtaining the following for the 2F model:
Hereafter, we simplified the notation by using only the scalar pressure. The RHS terms represent the internal energy sources. The first one is the adiabatic source term and Qα accounts for the energy variation due to elastic collisions. Explicitly, they are
The first term in Eqs. (27a) and (27b) is called the frictional heating (FH) (see e.g. Draine et al. 1983; Draine 1986; Leake et al. 2014; Ni et al. 2018). It depends on the squared modulus of the drift velocity between charges and neutrals. The second term is the thermal exchange (TE). While the FH is always positive leading to the same heating rate for both components, TE sign can vary and it is the opposite for neutrals and charges (implying that it tends to homogenise the temperature of both species). The sum of Qn and Qc
accounts for the variation of the total internal energy due to the collisions, finding that it is strictly positive, as the TE terms cancel each other. Then, we can say that differences in velocity between neutrals and charges contribute to increase the total internal energy of the plasma and, therefore, its temperature, but temperature differences between charges and neutrals do not (see e.g. the discussion by Popescu Braileanu 2020).
Regarding the 1F equations, from Eqs. (11b) and (11c), it follows that
where
is the component of the current density perpendicular to the magnetic field, with
. Again, we find that Q is strictly positive, indicating that the internal energy of the centre of mass will increase, similar to the total internal energy in the 2F approach.
![]() |
Fig. 1. Representation of the characteristic parameters of the atmosphere. In the top panel, the density of neutrals is in solid black line and the density of charges is in dashed-dotted line. Their scale is shown on the left axis. The right axis labels represent the neutral-charge (solid red line) and the charge-neutral (dashed-dotted red line) collision frequencies. The characteristic speeds are displayed in the bottom panel: the neutral (solid black line), charge (dashed line) and 1F (dashed-dotted green line) sound speeds and the 1F (solid yellow line) and charge (‘dashed-dot’ yellow line) Alfvén speeds. The vertical dashed line indicates the equipartition layer βplasma = 1. |
3. Vertical propagation of MA waves in a stratified atmosphere with a homogeneous horizontal magnetic field. Numerical experiments
In this work, we solve both 2F and 1F equations using the code MANCHA-2F (Popescu Braileanu et al. 2019a) based on the code MANCHA3D (Khomenko & Collados 2006; Modestov et al. 2024). Collision times vary by orders of magnitude through the chromosphere and in the deep layers they are much smaller than the typical time scales of hydrodynamic processes. Short collision times require small integration time steps for an explicit numerical scheme to satisfy the CFL condition. To handle this issue, MANCHA-2F introduces a semi-implicit scheme for updating the contribution of the collision terms in the 2F model, speeding up the computational time of the simulations. The code can also optionally solve the linearised system of equations, offering the possibility of separately assessing the linear and non-linear effects.
The numerical experiments are performed in a stratified atmosphere along the vertical axis (z-axis). The base is located at the bottom of the chromosphere, about 500 km above the solar surface. In this region, hydrogen is the primary donor of free electrons, which allows for a relatively self-consistent evaluation of charge density in our model. The top boundary is at the base of the transition region, where temperature starts to grow strongly.
It must be noted that the approximations underlying the 2F model require that the electron-proton collisional frequency is above the proton-neutral collisional frequency, the condition which is only fulfilled, on average, starting from the upper photosphere or the low chromosphere upwards (see Figure 1 in Khomenko et al. 2014), as well as Vranjes & Krstic (2013), Soler et al. (2015b), Ballester et al. (2018). In our work we consider heights starting from 600 km upwards, where this condition is mostly verified. Additionally, for the low wave frequencies considered in our work, it will be shown that both 1F and 2F models practically converge to the ideal MHD at the bottom part of the simulation domain (Piddington 1956). The application of both 1F and 2F models throughout the whole atmosphere is needed for consistency of their comparison. The ion-electron decoupling effects are not included in the 1F model either, so this aspect is not a source of discrepancies for the present discussion.
We set the equipartition region (where βplasma = p/pm = 1) at the middle of the physical domain. The background magnetic field is homogeneous and is oriented along the x-axis. We take the value of the background magnetic field to be ∼17 G to set the equipartition region at the middle of the domain. The hydrostatic equilibrium is computed from a VAL3C temperature profile (Vernazza et al. 1981), taking the mass density of hydrogen and electrons at the base of the chromosphere. This configuration resembles the one from Popescu Braileanu et al. (2019b), except that the magnetic field is considered constant with height in the present work. Using the model with horizontal magnetic field allows us to reduce the problem to 1D propagation while still considering mode conversion, since the waves will change their nature from acoustic to magnetic on their way upwards. In the Sun, horizontal magnetic fields are frequently found in the canopy regions surrounding intergranular or supergranular magnetic field concentrations (Wiegelmann et al. 2014).
We imposed a hydrostatic equilibrium (HS), in which each fluid is balanced by its own forces. As the background magnetic field is homogeneous, it does not contribute to the force balance. Then, pressure profiles are given by
where Hα is the pressure scale height and the label ‘0’ refers to the model atmosphere. We omit the index α for the 1F variables. For a uniform magnetic field, w0 = 0, making the equilibrium states equivalent for both 2F and 1F models. However, if we consider the case of a non force-free magnetic field, i.e.
, then w0 ≠ 0 (see discussion by Gómez-Míguez et al. 2024).
The characteristic speeds of the atmosphere are the sound speeds csα and the Alfvén speeds cAc and cA, given by
The speeds cs and cA are representative for the highly coupled plasma, whereas csα and cAc apply to the neutral and charged fluids when they are non-coupled. Here, we focus on the first case.
Fig. 1 illustrates the atmospheric variables. The collision frequencies mainly depend on the density, decreasing exponentially with height. The hydrostatic equilibrium determines the ionisation fraction, which takes into account only the initial conditions at the base and does not include ionisation/recombination effects. The ionisation fraction (which coincides with the charge mass fraction) varies with height due to the different pressure scales of neutrals and charges from 10−4 at the bottom of our atmosphere to 10−2 at its top. Due to the low ionisation fraction in this model atmosphere, 1F profiles of thermodynamic variables and characteristic speeds closely resemble those for neutrals. The sound speeds are nearly constant, reflecting the fact that the temperature varies smoothly. The Alfvén speeds exhibit the most significant differences due to the low number of charges. However, if the components of the plasma are highly coupled, only the 1F Alfvén and sound speeds are relevant for the study of waves (Piddington 1956; de Pontieu & Haerendel 1998; Kumar & Roberts 2003; Soler et al. 2013a,b).
For the numerical experiments, we launched a vertically propagating fast magneto-acoustic wave of a certain period from the bottom of the atmosphere. With MANCHA-2F, we solve both linear and non-linear systems of equations. Unless specified otherwise, we are referring to the non-linear solutions hereafter. The driver introduces the pure fast magneto-acoustic mode as a perturbation by fixing the amplitude of uc, z to be 10−3cs, taking the local value of the sound speed at the bottom layer. The other variables are then evaluated according to the analytical solution. Details regarding the driver configuration can be found in Appendix A. At the bottom, charges and neutrals are highly coupled, which means they move at the same velocity, uz (Zaqarashvili et al. 2011a; Soler et al. 2013b). Therefore, we set the amplitude of uz in the 1F driver to be the same as that in the 2F driver. We performed a set of 2F and 1F simulations, varying the wave period and we select the cases of periods P = 1, 3, and 5 s, whose frequency is close to the collision frequency at the high layers of the atmosphere (about 2 s−1).
The understanding of the numerical effects in the simulations is key for this analysis, especially since 1F and 2F employ different numerical schemes (explicit vs semi-implicit). In favour of performing a fair comparison, we restrict ourselves to the study of low-amplitude waves, despite the amount of heating we produce is negligible when compared to the background temperature. Low amplitudes allow for low non-linear effects, and we do not need to include any hyper-diffusivity or shock diffusivity for controlling numerical effects. We fix the time step to be the same for 1F and 2F simulations, choosing in all the cases the most restrictive one. We also perform tests for different spatial resolutions, finding that for the cases of 5 s and 3 s periods, dz ≈ 500 m is enough, but the 1 s period requires 4 times finer resolution. For the numerical stability reasons, a 6th order low-pass filter is applied to the solution each certain amount of simulation time, which is the same for 1F and 2F simulations. In all the experiments, we set a Perfectly Matched Layer (PML) (Berenger 1994; Parchevsky & Kosovichev 2007) of the same size and parameters, at the top boundary. In addition to these numerical configurations, we also study the effects of the numerical scheme in the solutions. The 1F code uses a 4th order Runge-Kutta method for the integration, while the 2F code uses a semi-implicit method for the collisional terms, which is at most second order (for more details, see Popescu Braileanu et al. 2019a). The 2F code has the option for computing the solution using an explicit scheme, the same as the 1F code. We have performed 2F simulations with both schemes, finding no significant differences between the solutions for our resolutions. Based on all of these arguments, we are confident that the differences between the solutions are caused by physical differences between the models.
The results of the simulations are shown in Fig. 2. At the bottom of the atmosphere, the gas pressure dominates over magnetic forces, and the waves behave essentially like acoustic-gravity waves. Since the waves move from more dense layers to less dense layers, the amplitude of velocity perturbation grows along the wave path. At a certain height, wave dissipation due to charge-neutral collisions becomes sufficiently effective in overcoming growth due to stratification and the amplitude of the waves starts to decay. As noted by Popescu Braileanu et al. (2019a,b) or Zhang et al. (2021), we also observe that damping reduces the non-linear effects of the wavefront. As expected, collisional damping is more effective for short-period waves, since their frequencies are closer to the collision frequencies.
![]() |
Fig. 2. Groups of panels from top to bottom: comparison between the numerical solution of velocity, temperature and magnetic field perturbations for waves of period P = 1 s, 3 s and 5 s at 250 s after the start of the simulation. Solid red lines: Perturbations in the velocity, temperature of charges and perturbations in the magnetic field in the 2F model. Solid cyan lines: Same for neutrals in 2F model. Black dashed lines: Same for the 1F model. The equipartition layer βplasma = 1 is indicated with a grey dashed vertical line. |
Broadly speaking, the 1F fluid solution agrees with the 2F results. As shown by Popescu Braileanu et al. (2019b), the 1F solution reproduces essentially the neutral fluid’s behaviour, since neutrals dominate in number. In line with their findings, we also observe a change in phase between charges and neutrals at the upper layers, leading to a velocity drift between the species. This difference is significant for the velocities, while temperatures remain similar for charges and neutrals because of the TE. Magnetic field oscillations are also very close for both models.
When analysing the solutions depending on the wave period, it leads to the conclusion that long-period waves exhibit greater decoupling effects, which may seem surprising. More in detail, we represent in Fig. 3 the centre of mass velocity and the drift velocity from the 2F simulations, computed as Eqs. (16) and (15). We find u ≫ w in most of the domain, except for the layers where the wave is more damped, finding there that u ≈ w. Due to the strong wave damping, it is less evident for a 1 s wave period. However, a zoom-in inspection of the oscillations above the equipartition region reveals u ≈ w. As stated before, the wave of larger period is the one leading to the largest drift velocity.
![]() |
Fig. 3. Comparison of the centre of mass velocity (u, cyan curves) and drift velocity (w, magenta curves) for the simulations represented in Fig. 2, at 250 s of simulated time. The values were computed from the 2F simulations. The vertical dashed line indicates the equipartition layer βplasma = 1. |
The 1F model is a valid description of plasma phenomena with characteristic timescales exceeding those of collisions. This model assumes that plasma components rapidly adjust their momentum and energy, behaving as a single fluid. When the timescales become closer to, but are still larger than collision times, ambipolar diffusion and other non-ideal effects due to neutrals may become relevant to describe the plasma behaviour in the 1F model. This limit was explored for 2F waves by Zaqarashvili et al. (2011a) and Soler et al. (2013a,b), who performed a normal mode analysis for a homogeneous atmosphere, and more recently Popescu Braileanu et al. (2019b) extended the study to a vertically stratified atmosphere. Our numerical experiments show that increasing the wave period in the range of periods we have explored leads to larger values of the drift velocity at the upper layers. This was already shown by other authors as Popescu Braileanu et al. (2019b), where they compared the standard deviation of wz for different wave periods. This result can be clarified by noting that shorter-period waves are more effectively damped, preventing them from reaching the upper layers where the most notable variations between the two models are expected. Conversely, large period waves can reach upper layers, where the fluids are less coupled. Therefore, it is not only important to check for the ratio ω/νnc when studying decoupling effects, but also consider the efficiency of the wave for transporting energy to layers of low coupling. If we continue increasing the wave period, the trend must change because both the 2F and 1F models must converge to the ideal MHD model (see e.g. Zaqarashvili et al. 2011a; Soler et al. 2013a,b; Cally & Gómez-Míguez 2023). We do not explore this question in this work, but it can be anticipated from Fig. 6 by Popescu Braileanu et al. (2019b), who studied the propagation of waves of periods from 1 s up to 20 s, finding that waves about 5 s period are the ones producing the largest drift velocities.
Several works, namely, Braginskii (1965), Zaqarashvili et al. (2011a), or Khomenko et al. (2014) have derived the set of 1F equations from multifluids, obtaining terms proportional to wα. Equations (17a) and (17b) show that for the case of a pure hydrogen plasma, wα ∝ w (it also stands if there are more components and all the neutrals move at velocity un and all the charges at velocity uc). We also have that for our weakly ionised model atmosphere, wn → 0 and wc ≈ w (see Eqs. (17a) and (17b)). Fig. 3 shows that u and w become comparable as the waves reach upper layers, and discrepancies between 1F and 2F models could appear. We will discuss this point in more detail in Section 5.
One of our primary objectives is to compare the heating effects in the 2F and 1F models. In this context, we represent in Fig. 4 (left column) the source terms resulting from collisional and ambipolar heating of each model, as defined by Eqs. (27a), (27b), and (29b), respectively. We multiply them by the factor
following the work by Popescu Braileanu et al. (2019b), so they are expressed in Ks−1. At the bottom of the domain, the plasma is highly coupled and the heating terms play little role, and the wave behaves as expected from the ideal MHD model. As the waves propagate upwards, the collisional damping becomes more and more significant and the amplitude of the heating terms rises up until they reach a maximum. The peak position is higher for longer periods, consistently with the view of Osterbrock (1961). When comparing these terms with the wave behaviour shown in Fig. 2, we observe that the position of the heating peaks are located after the velocity amplitude starts to be damped. The wave amplitude continues decaying after the peak, and the wave has less energy to release. Consequently, the increment of temperature decays as well. Most of the differences between the 2F and 1F solutions are observed in the upper layers for longer-period waves (see left panels in Fig. 4). For the 1 s period wave, we observe a transition in the behavior of heating rates. In deep layers, 2F heating has a higher amplitude than the 1F one and moving up, the 1F heating is dominating. Ambipolar heating is driven by magnetic forces, and the good agreement between model results proves that ambipolar diffusion is the main contributor to the drift velocity, hence, the impact of the G term (see Eq. (23)) on the solution for the atmosphere tested here is negligible. Furthermore, magnetic forces are able to drive larger drift velocities between neutrals and charges than pressure forces, as consequence of the low ionisation fraction of the atmosphere (Khodachenko et al. 2004, 2006; Pinto et al. 2008).
![]() |
Fig. 4. Left column: Sum of the 2F collisional heating terms (solid red line, see Eqs. (27b) and (27a)) and the 1F ambipolar heating term (black dashed line, see Eq. (29b))), at 190 s of simulated time. The factor NT (see Eq. (32)) is introduced in all the cases. Right column: Time-average temperature for the 1F and 2F models (solid and dashed lines, respectively). Different time intervals are represented with different colours. The vertical axis range is the same in all the panels. The 2F curves are computed from Eq. (34). From top to bottom, the rows refer to the 1 s, 3 s, and 5 s wave periods. The averaging time intervals are the same for the cases of 1 s and 5 s. We also include residuals (1F–2F) to better compare the differences between the models. The vertical dashed line indicates the equipartition layer βplasma = 1. |
Next, we focussed on the key variable, the temperature. We can compute the average temperature increase by averaging the temperature perturbation over a wave period for each layer of the atmosphere. For the case of the 1-second wave period, we chose to average several periods to reduce the noise. We search for the peaks and valleys of the wave and construct the wave envelopes by interpolation. Then, we compute the mean value of the top and bottom envelopes and, finally, the time average. For the 2F wave, we compute the centre of mass temperature, so temperatures of both models can be compared directly. By combining Eqs. (12b) and (B.1c), it follows
where we apply Eqs. (17a) and (17b) on the last step.
We can safely neglect the second term in Eq. (33) because ξc ≪ 1 and ρw2 ≪ ∑pα, being null at the equilibrium. Then, we find
This expression is similar to the one used, for example, by Popescu Braileanu et al. (2019b). Those converge for a low ionisation fraction, but may lead to different values when the plasma is highly ionised.
The comparison of the centre of mass temperatures from each model is shown in the right panels of Fig. 4, for different time ranges. It is apparent that the average temperature increases over time in both models. For all the wave periods, differences between the 2F and 1F models are minor, but they become more evident at heights above the peak in temperature increase. Below the peak, differences are subtle but still discernible. After the peak, the 1F model gives a more significant average temperature increase than the 2F model. We observe the opposite behaviour at heights before reaching the T1 peak. The same pattern applies for all the considered periods. We have excluded the upper layers from the calculation for the 1-second period wave because the wave amplitude is too small and the computation becomes dominated by noise. It is not straightforward to compute the temperature rate per time for each layer from the heating terms and also the method for computing the average temperature may introduce some systematics. However, we can state that both the heating terms and the average temperature increase exhibit a similar behaviour but, quantitatively, we cannot confirm if the computations match.
Having examined how the temperature changes as a function of height in the atmosphere, we study next how the average temperature increase changes as a function of time. In Fig. 5, we present the average temperature increase at the heating peak (different for the three periods) over time for each of the simulations. The short-period wave data points overlap, indicating a good agreement between the 2F and 1F models. Conversely, there are more differences visible for the longer-period waves. Since the wave energy is proportional to the wave amplitude squared, if there is more energy available, then it is possible to increase more the internal energy of the plasma, even if the dissipation is less effective. These results are consistent with Fig. 14 by Zhang et al. (2021), where they represented ⟨T1⟩ for different wave periods, but they were not including a magnetic field in their study.
![]() |
Fig. 5. Evolution of the average temperature increase at the heating peak as a function of time. Diamonds: P = 5 s; dots: P = 3 s; stars: P = 1 s. The 2F data points are represented in black and the 1F ones in red. |
It is important to highlight the linear dependence of ⟨T1⟩ on time, in agreement with what was previously reported by Popescu Braileanu et al. (2019b) from their simulations with a similar set-up. This linear dependence is consequence of launching waves of small amplitude, meaning that energy dissipation is solely dependent on the initial background state and the wave frequency (Braginskii 1965; Priest 2014; Tracy et al. 2014). This increment is minor compared to the background temperature, however, one has to take into account that we use very low initial amplitudes, about 10 m s−1. In the solar case, at the upper photosphere, the wave amplitudes reach ∼1000 m s−1 (see, for example, Beck et al. 2009), so ⟨T1⟩ will be proportionally larger.
The analysis of the heating terms represented in Fig. 4 brings another curious feature. We observe two groups of peaks whose envelopes have different amplitudes and shapes. This behaviour is more clear when looking at the case of 1 s wave period. From Eqs. (27a) and (27b), it follows that Qn + Qc ∝ wz2. We show in Fig. 6 the shape of wz2 for all the wave periods simulated, obtaining that wz2 exhibits the same behaviour as Q. We have also computed wz2 for the same set-up, but solving the linear equations with MANCHA-2F. The comparison shows that the two groups are present in both cases, but in the linear simulation they follow the same envelope. Back to Fig. 3, if we look at one of the peaks of uz, the slope of the wave is steeper after the peak than before, for those more sharped. As consequence, the peaks and valleys in wz become asymmetric due to the non-linear effects. Once the amplitude of wz2 starts to decay, the non-linear effects become weaker and the amplitude of the two groups of peaks tend to the linear amplitude. It is interesting to observe that for the case of 1 s wave period, the envelopes of wz2 have the maximum values at different layers. A similar result was obtained by Popescu Braileanu et al. (2019b) (see Fig. 8) for the same set-up. It is also possible to guess the same behaviour for the 3 s case. Despite the small amplitude of the waves, wz is highly sensitive to the non-linear effects due to their high frequency.
![]() |
Fig. 6. Comparison of wz2 for a linear (cyan line) and non-linear (magenta line) 2F simulations, at 250 s of simulated time. From top to bottom, the wave periods are P = 1, 3 and 5 s, respectively. The vertical dashed line indicates the equipartition layer βplasma = 1. |
We completed our analysis of the simulated waves by looking into the energy distribution. From Braginskii (1965), Bray & Loughhead (1974). Walker (2004, 2014), Cally & Gómez-Míguez (2023) or Cally (2023), the wave energy terms can be defined as
From left to right, these expressions refer to the kinetic energy density, the acoustic energy density, and the magnetic energy density. Compared with the works cited above, we do not include the buoyancy term here as we have ω ≫ νac, where the acoustic cutoff frequency reaches a maximum value of
mHz at the bottom of our atmosphere, which is located around the temperature minimum. Therefore, we consider total energy WT to be only the sum of the kinetic, acoustic and magnetic energy, for all the fluid components considered in each model. Figs. 7 and 8 show the amount of energy of each type that the waves are carrying along the model atmosphere. Those terms are multiplied by the 1F group velocity of the fast mode,
, so the total energy times the group velocity (the total wave energy flux) is constant in the 1F limit in absence of dissipation mechanisms, based on the wave-action conservation (see e.g. Tracy et al. 2014; Walker 2014). All the waves exhibit a constant energy flux at lower layers of the atmosphere, where the neutrals and charges are highly coupled by collisions. Once the collisional dissipation becomes effective, the total energy decreases. This was also noted by Zhang et al. (2021) when analysing the acoustic energy of the waves. We also find that the distance from the layer where the wave starts to decay up to the layer where the wave effectively vanishes decreases for short wave periods, which evidences the more efficiency of charge-neutral collisions in dissipation high-frequency waves.
![]() |
Fig. 7. Representation of the 1F wave energy flux contributions for the three wave periods studied in this work. From the top to the bottom, the wave periods are 1 s, 3 s, and 5 s, respectively. Blue line: Magnetic energy (Wm). Green line: Acoustic energy (Wac). Red line: Kinetic energy (WK). Black line: Total energy (WT). The vertical dashed line indicates the equipartition layer βplasma = 1. |
![]() |
Fig. 8. Representation of the 2F wave energy flux contributions for the three wave periods studied in this work. From the top to the bottom in groups of two plots, the wave periods are 1 s, 3 s, and 5 s, respectively. Blue line: the magnetic energy (Wm). Green line: Acoustic energy (Wac, α). Red line: Kinetic energy (WK, α). Black line: Total energy (WT). The terms of the neutrals are shown in solid lines and terms for the charges in dashed lines. We split the terms WK, c and Wac, c in panels separated from neutrals due to the difference in scale. The vertical dashed line indicates the equipartition layer βplasma = 1. |
When looking at the behaviour of the energy components in 1F (see Fig. 7), we observe that, at the lower layers, the wave energy is divided into kinetic and acoustic energy almost in the same proportion, with a small contribution of the magnetic energy. This behavior is the print of an acoustic wave, whose energy equally splits into acoustic and kinetic (see e.g. Landau & Lifshitz 1987; Walker 2014). As the wave propagates upwards, the kinetic energy keeps constant but the acoustic energy gradually exchanges to magnetic energy. At the point where energy dissipation becomes efficient, all the energies start to decay, but the exchange between acoustic to magnetic energy keeps the same trend. In the neighborhood of the equipartition region, the wave reaches a layer where acoustic and magnetic energies are in the same proportion, and as the wave continues its path, the acoustic energy is gradually exchanged into magnetic energy. In other words, the analysis of the wave energy shows that the wave transforms from acoustic to magnetic (see e.g. Schunker & Cally 2006; Khomenko & Collados 2006; Walker 2014; Cally & Gómez-Míguez 2023).
If we follow the same analysis for the 2F waves (see Fig. 8), we find that the energy terms related to the neutrals and magnetic energy show approximately the same behaviour as in the 1F waves. Regarding the kinetic and acoustic energy of charges, we find them to be orders of magnitude smaller than those of the neutrals because of the low ionisation fraction. In addition, at deep layers, those energy fluxes are clearly different; the acoustic energy approximately doubles the kinetic energy. This can be explained as follows. In those layers, the ideal MHD solution is still valid and the phase speed is essentially cs, therefore, ω ≈ kzcs. Then, from Eq. (A.3), it follows that pc, 1 ≈ ρc, 0csuc, z, where we have neglected the growth term since we are only interested in a small region and also assume that uc, z = uz, in light of Fig. 3. Introducing this relation into the expression for the acoustic energy for charges in (35), we obtain
which is the double of the kinetic energy of the charges. In the last step, we have applied the limit of weakly ionisation. Unlike the case of the neutrals, WK, c and Wac, c grow up at the deep layers and then decay after peaking, much similar to the behavior of Wm.
For all the wave periods considered in this work, we observe that the dissipation becomes more efficient as more energy is exchanged into magnetic energy. Forteza et al. (2006) found the fast waves to be efficiently damped by charge-neutral collisions in prominences. In their study, the Alfvén speeds were above 10 km s−1, while the temperature was 8000 K. For this temperature in the VAL3C model, the sound speed is less than 10 km s−1, so their waves should have more magnetic than acoustic energy. By comparing Figs. 1 and 2 from Soler et al. (2013b), we see that the wave dissipation is larger for βplasma ≪ 1 regions than for βplasma ≫ 1 regions. In addition, the works conducted by Soler et al. (2015a), Popescu Braileanu & Keppens (2021) or Cally & Gómez-Míguez (2023) have shown that if a wave excites efficiently the magnetic field, such as in the case of fast and slow waves when they are magnetic (that is, when β ≪ 1 and β ≫ 1, respectively), or in the case of Alfvén waves, then charge-neutral collisions efficiently damps the wave.
After we analysed the wave energy for each model, we compare the total wave energy from each one. In Fig. 9, we show the difference in wave flux between the models. We observe that the envelope and peak position of the flux differences reminds the behaviour of the heating terms (see Fig. 4, or Fig. 6). We highlight this fact here since it points to a physical origin for the total flux differences. Another important aspect is that the flux differences are mostly positive along the atmosphere, namely, the wave in the 1F model is carrying more energy to the higher layers than in the 2F model. The 2F model describes the dynamics of two fluids, whereas the 1F model restricts itself to the centre of mass of the system, so we would expect the energy of the 2F model to be equal or overcome the 1F energy. Therefore, the result can be explained by considering that the 2F model is more efficient at dissipating energy at deep layers than the 1F model. This view also aligns with the temperature increase differences shown in Fig. 4, where we have noted that the 2F model increases the temperature more than the 1F model before the heating peak.
![]() |
Fig. 9. Residuals of the total wave energy flux (1F–2F). The results are computed for the different wave periods considered in this work. The vertical dashed line indicates the equipartition layer βplasma = 1. |
The analysis of the simulations brings us to some key points about wave heating through charge-neutral collisions. Commonly in literature (i.e. Zaqarashvili et al. 2011a; Soler et al. 2013a,b; Khomenko et al. 2014) it is mentioned the ratio, ω/ν, with ν the collision frequency of the considered charge-neutral model, as the criterion for considering the partially ionised effects. However, in line with the findings of Popescu Braileanu et al. (2019b) or Zhang et al. (2021), as well as this work, the most significant temperature increases are not driven by the short period waves. In those set-ups, the waves are launched at the bottom of the atmosphere and propagate vertically. Then, the long-period waves can transport more energy than short-period waves to the high layers, where the coupling between the species weakens. Therefore, the ratio ω/ν is a good reference for a local analysis, but also the capacity of the wave for transporting energy should be taken into account. We also find that when the magnetic energy of the wave increases, the charge-neutral dissipation becomes more efficient, in agreement with the studies by Forteza et al. (2006), Soler et al. (2015a), Popescu Braileanu & Keppens (2021) or Cally & Gómez-Míguez (2023). Finally, we propose the efficiency of 2F model in dissipating energy at deep layers as the explanation for the discrepancy on the temperature increase. However, the physical assumptions that lead to a different dissipation between models are still not clear and will drive the discussion of the following sections.
4. Vertical propagation of MA waves in a stratified atmosphere with a horizontal and homogeneous magnetic field. Analytic approach
In light of the numerical experiments, we went on to apply an analytical approach to deepen into the solutions of each model and to better understand the discrepancies between the models. As we applied the same methodology for both models, we present below all the partial results in parallel. Our first step involved deriving the linear wave equations. We considered the case of vertical propagation (z-axis) in a stratified atmosphere, with a horizontal magnetic field in the x-axis. As usual, we split the variables, say f, into equilibrium and perturbation parts, f = f0 + f1, such as |f1|/f0 ≪ 1, where the subindex ‘0’ stands for the equilibrium and the subindex ‘1’ stands for the perturbation. We considered a static equilibrium, so uα, z, 0 = 0 and |uα, z, 1| much smaller than the phase speed. Subsequently, we removed the subindex ‘1’ from the velocity perturbation. Keeping only the terms up to the first order, the set of 2F linear equations is (see e.g. Popescu Braileanu et al. 2019b):
Similarly, the 1F set of linear equations is
where the only non-ideal contribution comes from the ambipolar diffusion in the induction equation.
By combining the linear equations, we obtain a set of two second order linear equations that involves the velocities of each fluid. For the 2F model, we find
and, for the 1F model
where we introduce the charge velocity due to ambipolar diffusion, uAmb, z, as
This definition follows from introducing w1F (Eq. (23)) in relation (18), only accounting for the magnetic term. In the 2F model, we find wave equations for the velocities of neutrals and charges. Conversely, a wave equation couples with a diffusion equation in the 1F model. We also note that a term proportional to
, which accounts for the stratification, is absent from the equation of uAmb, z because Bx, 0 is uniform.
Across this work, we have denoted the decay of the wave amplitude as damping or dissipation. In absence of other effects, wave dissipation implies that the wave amplitude decreases strictly because the wave is releasing energy to the environment. Note however that there is no dissipation term in the linear energy equations as that term is of the second order, therefore, heating cannot be properly captured on the linear approach (see e.g. Cally & Gómez-Míguez 2023; Cally 2023). In the case of the stratified atmosphere, velocity waves increase their amplitude but not their energy flux due to the gravitational stratification. In terms of velocity amplitude, the growth by stratification compensates for the effects of the dissipation when dissipation is still weak. Consequently, Figs. 7 and 8 show that wave energy flux is constant at deep layers, and above them the energy flux drops down. The velocity waves we are studying propagate to layers with decreasing density, increasing their amplitude, and to layers of decreasing collision frequency, enhancing the decoupling effects. The latter stands for a propagating wave such ω < αρ0. Propagating magneto-acoustic waves exhibits a maximum dissipation for ω ≈ αρ0 and it decreases for larger frequencies (see discussions by Soler et al. 2013a; Popescu Braileanu et al. 2019b). For the waves we study, both effects are entangled, so it is not straightforward to talk about dissipation properly. Equations (39a), (39b), (40a) and (40b) can be solved by variable separation. If the background variables are constant, then the wave variables admit a solution of the type
. The term proportional to the first spatial derivative is the one that drives the change of the wave amplitude along the atmosphere. To decouple this effect from the dissipation, we introduce the wave variables (see similar derivations by Lamb 1932; Deubner & Gough 1984):
The transformations are introduced in Eqs. (39a), (39b), (40a), and (40b), taking into account that the proportional factors are not a function of the time. Now, the ψ functions only depend on z and the time derivatives can be removed from the wave equations accordingly to the sinusoidal solution. Therefore, the equations for the 2F spatial variables ψ read as (in 2F),
and those for the 1F model (see Eqs. (40a) and (40b))
We neglected the terms that involve the derivatives of aα terms, with α ∈ {n, c, u, Amb}, consistently with the condition that the wavelength is much smaller than the pressure scale height.
We used the Eikonal approach to approximate the wave equation solution, assuming that the wave amplitude changes on a scale larger than its wavelength (see e.g. Weinberg 1962; de Pontieu & Haerendel 1998; Tracy et al. 2014). This means that a solution of the form ψ = A(z)eiθe(z) can be proposed, where ψ is the vector for the wave solutions (e.g. ψ = (ψn, ψc) in the 2F model), A(z) is the wave amplitude, θ = ∫z0zkz(z′)dz′ is the spatial wave phase, with kz the vertical wave number, and e is the polarisation vector. By neglecting spatial derivatives on kz, A and e, (see e.g. de Pontieu & Haerendel 1998), the set of differential equations reduces to a set of polynomial equations of the form
where
are the dispersion matrices and
is the polarisation vector, which is defined as the unit null vector of the dispersion matrix.
The determinant of the dispersion matrix must be equal to zero to obtain the non-trivial solution of the system of equations. This condition leads to the well-known dispersion relations (see (Kumar & Roberts 2003; Zaqarashvili et al. 2011a; Soler et al. 2013b; Popescu Braileanu et al. 2019b) for the 2F case and (Chapman & Cowling 1970; Forteza et al. 2006; Ballester et al. 2018) for the 1F one), which are, in each case,
Both equations are 4th order in wave number (kz), leading to two different pairs of normal modes, each pair containing an upward and a downward propagating mode. We observe that
contains a term proportional to ω4 that is missing in the
expression. From Eq. (52), the ratio of the ω4-proportional term to the ω3-proportional one, in absolute value, is ω/(ρ0α0). This ratio is nothing but the estimator for the contribution of the inertial terms in the drift velocity equation (see Eq. (22)). Therefore, the absence of the ω4 term is the consequence of neglecting inertial terms in Eq. (23), as noted by Zaqarashvili et al. (2011a) for the case of Alfvén waves.
Working in terms of the wave functions described by Eqs. (42), (43), (44), and (45), rather than the model variables (un, uc, u, Bx) offers the advantage of symmetry between upward and downward modes, and the imaginary part of the wave number is directly linked to the collisional dissipation. In Fig. 10, we show the solutions of the dispersion relations given by Eqs. (52) and (53) for our model atmosphere.
![]() |
Fig. 10. Vertical wave numbers for the 2F model as functions of height for all wave periods studied in this work. From top to bottom, the wave periods are 1 s, 3 s, and 5 s. Blue and green solid lines: upward and downward fast mode. Red and black solid lines: Upward and downward normal mode (different from the fast mode). The left column represents the real part and the right represents the imaginary part. The fast mode lines are multiplied by an arbitrary factor for the representation. The vertical dashed line indicates the equipartition layer βplasma = 1. |
One pair of solutions has a similar behaviour as the classic fast magneto-acoustic mode, but it dissipates energy because of charge-neutral collisions (mode 4 travels upwards and mode 3, downwards). As we have seen before, at deep layers the fast mode behaves as an acoustic wave, travelling at the speed cs ∼ csn, since the atmosphere is weakly ionised. Once the wave crosses the equipartition layer, it behaves as a magnetic wave, travelling with a speed that tends to cA when reaching layers where βplasma ≪ 1. The other mode (mode 2 traveling upwards and mode 1, downwards) is highly dissipated at the deep layers as the real and imaginary parts of kz have similar values. These solutions resemble those presented in Fig. 13 of Popescu Braileanu et al. (2019b), but here we have included all the wave periods explored in this work.
For model comparison, we show in Fig. 11 (black solid line) the relative difference between the 1F and 2F wave numbers with respect to the value computed for the 2F model, for both the real and imaginary parts. At this point of the discussion, we focus on the black curve, letting the others for Sect. 5.1. We only excite the fast mode in the numerical experiments, so we focus the discussion on this mode. Only the upwards mode is represented. Differences in the real part of kz are negligible at deep layers (of the order of 0.1%), reaching a maximum of 1% in the higher layers for the 1 s wave period. As expected, those differences increase with the wave frequency. However, the imaginary part of kz shows more significant differences at deep and high layers. We note that the differences at the high layers increase with the wave frequency, but those at deep layers seem to be unaffected by the wave period. This result shows that the waves are more damped in the 2F model at deep layers, but the opposite occurs in the high layers. This picture matches qualitatively with the temperature increase residuals shown in Fig. 4. Even though Fig. 6 informs us that the non-linear effects play an important role, Fig. 11 gives us a chance to figure out an explanation for model discrepancies using the linear theory.
![]() |
Fig. 11. Difference between the 2F and the 1F wave numbers relative to the 2F wave number. Left column: Calculations for the real part of kz; right column: same calculations, but for the imaginary part of kz. Only the upwards fast mode solution is represented. Solid black line: differences computed asumming the 1F model described in Section 2.2; dashed red line: differences computed extending the 1F for accounting the contributions of qw and G; dashed-dotted red line: differences computed extending the 1F for accounting the contributions of qw alone and G alone. The vertical dashed line indicates the equipartition layer βplasma = 1. |
A useful parameter to put into context the importance of the differences in kz that we have obtained is the quality factor of the waves, commonly defined as
If
, the wave is effectively damped in a distance of a wavelength. For
, the wave dissipates energy in scales larger than its wavelength and for
, it is efficiently dissipated before reaching the scale of its wavelength. Fig. 12 shows that below 1000 km, dissipating the wave energy requires more than 100 periods, indicating a weak dissipation. However, non-linear effects become important for the 1 s and 3 s period waves at that height, enhancing energy dissipation, as shown in Figs. 6, 7 and 8. As the waves reach layers of βplasma < 1, the wavelength is lengthened and the imaginary part of kz increases, so we get Q ≈ 1 at the high layers (see Fig. 10). From Fig. 11, we see that the more significant differences appear at the bottom of the atmosphere, where the waves propagate almost without dissipation or at the top layers, where the waves arrive with low energy. Therefore, the differences in wave flux shown in Fig. 9 may be caused by deviations at the intermediate layers.
![]() |
Fig. 12. Quality factors for the simulated wave periods for the 2F model. The horizontal grey line indicates the value |
5. Model discrepancies
In the previous sections, we compare a purely hydrogen 2F model with a standard 1F model with ambipolar diffusion, whose parameters
are introduced consistently for such plasma. After examining numerical simulations and analytical solutions, we found deviations in the imaginary part of kz between models to explain why the wave in the 1F model is upwardly transporting more energy than in the 2F model. Next, we tried to determine the origin of those differences by looking into the model construction. As the main assumptions of the 1F model are listed in Section 2.2, here we delve into the variable definitions.
While the frame of reference in NF models refers, say, to the laboratory frame of reference, the 1F variables refer to the centre of mass frame of reference, so their definitions depend on the relative velocities of each component to the centre of mass velocity, wα. In Appendix B, we list the definitions of the 1F variables in terms of the 2F variables. For further details, we refer to the works by Braginskii (1965), Schunk (1977) or Khomenko et al. (2014), among others. The inspection of the definitions bring out that most of them involve terms proportional to ραwα2 or ραwα3, which can be neglected in our study (see discussion above Eq. (34)). However, the 1F heat flux (see Eq. (B.1d)) includes two terms proportional to wα and to the thermal pressure. The latter was also noted by Schunk (1977), who suggested checking these terms when comparing models with different variable definitions in the velocity frame of reference. The 1F heat flux components proportional to wα only appear when it has been derived from a NF model closed without including a heat flux for each species, as the 2F model discussed here. In such situation, as shown in Appendix C, the terms regarding the 1F heat flux definition appear, even though there is not any heat flux present in the NF model. From Eqs. (B.1d), (17a) and (17b), we find this 1F heat flux to be
in absence of viscosity. We point to the second expression when referring to qw, which is derived from the previous one under the assumption of Tn = Tc, as in the case of G (see Eq. (25)). In addition, as for the G term, it vanishes for the high and low ionisation limits. Both S* (or Q) and qw are of the order 𝒪(w), so the last one seems a valuable candidate to take into account for explaining the model discrepancies.
5.1. A look into the neglected contributions
Following our discussion of the main approximations considered in the 1F modelling, we examine the ones we consider that mainly influence the discrepancies between models: the contributions of G, qw and the inertial terms. For the first two cases, Eqs. (25) and (55) allow us to incorporate these effects in the 1F model described in Section 2.2. For the case of the inertial terms, it is not straightforward to account for them easily in the 1F model, but we can use Eq. (22) for estimating them.
We first considered the contributions of G and qw to the dispersion relation. For the sake of simplicity, we directly neglected the terms involving the derivatives of the background quantities, which is reasonable for the range of frequencies of this study. The mass and momentum equations remain as before. We leave the details about how to extend the energy and induction equation to Appendix C. From the set of Eqs. (C.3a), (C.3b), (C.3c), and (C.3d), we obtain the dispersion relation
As expected, G and qw slightly modify the expression derived in Eq. (53). We solve Eq. (56) for the upwards fast mode and represent it in Fig. 11 in red dashed lines. We refer to this model as the extended 1F model. We find that the new dispersion relation can solve the discrepancies between models at deep and intermediate layers. As we have noted before (see discussion in Section 4 about Fig. 11), those differences look weakly dependent on the wave period. For the model atmosphere, we have
and the terms proportional to ω2 in the coefficient of kz2 in Eq. (56) reduce to the ones in Eq. (53). Therefore, the modifications introduced by G and qw (proportional to 1 + ξc, 0) are appropriate for explaining those differences. As closure, if one only considers the term G or the term qw (only the ambipolar contribution) alone, it follows
This dispersion relation is a particular case of the one derived by Forteza et al. (2006), when setting kx = 0 and in absence of collisions with electrons. We also represent this case in Fig. 11, finding that both terms are needed for the correct match between the imaginary part of the wave numbers.
After adding the corrections of our extended 1F model, the period dependent discrepancies at the high layers remain. In Fig. 13 we represent the estimator for the inertial terms for all wave periods computed after Eq. (22). We find them to be negligible at the deep layers, where the collision frequency is large, but they become more relevant at the high layers. By comparing ϖinertia with the curves for the extended 1F model in Fig. 11, we find the same trend with height and period, and the values are comparable. As mentioned, we cannot provide a direct proof confirming that inertial terms produce those differences at high layers, however, Fig. 11 tentatively points to such conclusion.
![]() |
Fig. 13. Estimator of the impact of inertial terms for the three wave periods considered in this work as function of the height. The vertical dashed line indicates the equipartition layer βplasma = 1. |
It must be noted that the above discussion is limited to the model atmosphere considered in the present work, which has a rather low ionisation fraction. For high ionisation fractions, it can be expected that both magnetic and thermal pressure decoupling mechanisms vanish (see Eq. (20) or Eq. (29) in Forteza et al. 2006) and the heating is significantly reduced. Therefore, the discrepancies between 2F and 1F models would be also reduced in absolute terms. In the intermediate situation, when neutrals and charges have similar numbers, both decoupling mechanisms become of the same order of magnitude (see discussion by Pinto et al. 2008). The drift velocities are expected to be smaller than in the weakly ionised atmosphere, but, nevertheless, non negligible.
5.2. Implications on the non-linear regime
We present an argument for solving the discrepancies between models in the linear regime above. Next, we take a look back to the simulations and the non-linear regime.
We focus again on the internal energy equations. We established that the main discrepancies between models are driven by the intermediate layers, so then we considered the approximation Eq. (23) to the drift velocity and leave the inertial terms aside. Then, we took Eq. (28) for the 2F model and Q = J ⋅ E* for the 1F model, so that
We see that Eq. (58a) coincides with the expression obtained by Braginskii (1965), Khodachenko et al. (2004) or Khodachenko et al. (2006), and the first-order expansion for high collisional coupling derived by Benavides & Flierl (2020). We found that Qn + Qc ≠ Q. Nevertheless, the equality is fulfilled if G is neglected. On the one hand, Eq. (58a) indicates that including the G term increases the heating. On the other hand, Eq. (58b) is not strictly positive if
and
. The first condition may depend on the phenomena (waves, convection, Rayleigh-Taylor instability, …) and the second condition stands when the G term dominates (see discussions in Braginskii 1965; Khodachenko et al. 2004, 2006; Pinto et al. 2008). As mentioned in Sect. 2.2, the G term is not of interest in many practical situations, so Q is given by Eq. (29b) in a good approximation, but (58b) might be smaller than the former if the first condition is fulfilled. For instance, we have from Eqs. (C.2b) and (C.4a) that
in the linear regime, so we expect Q to be larger when G is included. Therefore, the 1F heating at intermediate layers can be enhanced for our set-up if G is included.
Finally, we also exploit the advantages of accounting for qw. This term appears as a flux term in the energy equation so, in principle, it plays no role in the local heating. In Eq. (55), we have put together the contributions from the internal energy flux and the pressure flux. Now, let us split them in
and
. Then, from Eqs. (C.1c) and (C.1b), we have
Next, we split ∇ ⋅ q(2) = ∑pα∇⋅wα + ∑wα ⋅ ∇pα. From the second term, considering the relations (17a), (17b), and (24), it follows that
If we sum up Eqs. (58b), which is expressed as as
, and (60), then Eq. (58a) is recovered. This result aligns with Braginskii (1965) and demonstrates that including G together with qw is required for recovering the exact 2F heating rate, under the assumption of neglecting the inertial terms. Once again, this conclusion agrees with the discussion in Section 5.1 in the linear regime, where we find that adding G or qw alone is not sufficient for solving model discrepancies. In addition, when including qw, we get extra terms: ∇ ⋅ q(1) is related with the internal energy flux and ∑pα∇⋅wα with the adiabatic source term (but this term is not adiabatic). The first term can be easily adapted for the 1F model following Eq. (55), but the second one leads to complicate expressions. Therefore, we would suggest to apply a 2F modelling for a practical implementation of those effects, when required.
6. Conclusions
In this work, we compared two models that apply for a partially ionised atmosphere: a 2F model composed by neutrals and charges (Braginskii 1965; Zaqarashvili et al. 2011a; Meier & Shumlak 2012; Soler et al. 2013a,b; Leake et al. 2013; Khomenko et al. 2014; Popescu Braileanu et al. 2019a,b) and a 1F model that only includes ambipolar diffusion as a non-ideal effect (Forteza et al. 2006; Khomenko & Collados 2012a,b; Soler et al. 2015a; Cally & Khomenko 2019; Khomenko & Cally 2019; Popescu Braileanu & Keppens 2021) The extensively used 1F model describes the interaction between charges and neutrals through the ambipolar diffusion term in the generalised Ohm’s law. This term depends on the drift velocity between charges and neutrals. To analyse the heating process, we obtained the heating source terms for each model. Our research focuses on estimating the heating caused by wave propagation in the atmosphere using specific models. Similar to the study by Popescu Braileanu et al. (2019b), we establish a hydrostatic equilibrium atmosphere with a VAL3C temperature profile and a uniform horizontal magnetic field. The strength of the magnetic field is chosen such that the equipartition region, βplasma = 1, is located in the middle of the atmosphere. We simulated the propagation of small amplitude waves in this equilibrium atmosphere, with periods 1, 3, and 5 seconds (from the bottom to the top) with a decreasing collision frequency along the wave path. From the simulations, we could calculate the temperature increase due to the collisional heating. Additionally, we compared the 1F and 2F heating terms and analyse the distribution of the wave energy in each case. We concluded the analysis by employing the Eikonal approach to solve the wave equation. This allowed us to derive the 1F and 2F dispersion relations for each simulated wave. We then compared the wave numbers obtained for each model.
Below, we summarize the main findings of our research:
-
Similarly to what was concluded previously by a number of authors (see e.g. Kumar & Roberts 2003; Zaqarashvili et al. 2011a, 2013; Soler et al. 2013a,b; Ballester et al. 2018; Popescu Braileanu et al. 2019b; Zhang et al. 2021; Soler 2024), MHD wave dissipation by means of elastic collisions is enhanced for short-period waves. However, as suggested by Osterbrock (1961) and in line with other works, namely, by Popescu Braileanu et al. (2019b) and Zhang et al. (2021), we find long-period waves to increase the background temperature more significatively. Waves that are less affected by collisional dissipation can carry and deposit more energy at the higher layers of low collisional coupling. While the ratio of wave frequency to collision frequency is important, it is also essential to consider how effectively waves transport energy along their paths.
-
The differences between the 2F and 1F temperature increase that we obtain align with those for the heating terms and the total energy flux of the waves. The latter reveals that the waves in the 2F model transports less energy upwards than in the 1F model. Since the 1F model allows the wave to transport more energy to the higher layers, where the collision frequency is smaller, it can rise more the local temperature, which explains the results seen in Fig. 4. To check this hypothesis, we applied linear theory to obtain the dispersion relation for each model. The comparison of the wave numbers for the fast mode demonstrates that the 2F model dissipates more energy than the 1F in the deep and intermediate layers, but the opposite effect is seen in the higher layers. Therefore, the conclusions of the linear solutions are aligned with those of the numerical experiments.
-
We explored the main assumptions that differentiate the models, finding the contribution of G, and qw (the latter, related with the change in the reference system of velocities from that of neutrals and charges to the common centre of mass) as the cause of the discrepancies at deep layers. We also found the inertial terms to explain the discrepancies at the higher layers.
-
Finally, we demonstrated that G and qw are required for recovering the 2F heating rates in agreement with the findings of Braginskii (1965).
This study employed several assumptions to simplify the comparison between models, which proved helpful in delving into the physical details of the 1F approximations. One of the primary limitations concerns the ionisation fraction, as neglecting ionisation and recombination effects means that each fluid balances itself alone in the equilibrium. Consequently, the variation in the ionisation fraction is solely determined by the different stratification of each fluid. Zhang et al. (2021) highlighted the potential significance of the ionisation fraction in accounting for frictional heating, given the sensitivity of collision frequencies to this factor. When conducting 1F radiative MHD simulations, Nóbrega-Siverio et al. (2020b) found that the local thermodynamical (LTE) approximation significantly underestimates the ionisation fraction by 2–3 orders of magnitude in non-equilibrium (NEQ) flux emergence simulations, leading to an overestimation of ambipolar heating. In line with the previous work, Martínez-Sykora et al. (2023) also found NEQ effects to be important at the upper layers of the chromosphere, allowing for a more significant temperature growth due to ambipolar heating. In the two-fluid framework, Snow et al. (2023) studied shock propagation in the solar chromosphere accounting for ionisation and recombination processes, finding NEQ effects to reduce the temperature increase in the post-shock region when compared with MHD models.
Another improvement of the study would be including helium in the discussion. Some works have explored NF models that include helium (see e.g. Zaqarashvili et al. 2011b; Vranjes & Krstic 2013; Martínez-Gómez et al. 2017). These works found the coupling between helium and hydrogen to be weaker than the coupling between neutral hydrogen and protons for high chromosphere and prominence conditions. As a consequence, they found larger drift velocities and damping effects if only hydrogen were considered, for the same wave frequencies. In this sense, it can be said that the helium reduces the applicability of 1F models.
Our work focuses on the ion-neutral collision damping mechanism (in 2F) and on the ambipolar diffusion mechanism (in 1F), and on their comparison. Therefore, we purposely reduced the amplitudes of the initial perturbation to prevent shock formation. In a more realistic situation, other damping mechanisms would be at play, such as viscosity, or Ohmic resistivity. These mechanisms might be able to overcome the ambipolar mechanism (see, eg. Terradas et al. 2002; Khodachenko et al. 2004, 2006; Carbonell et al. 2006; Forteza et al. 2008; Soler et al. 2015a). The presence of non-linearities would enhance the energy dissipation due to ion-neutral collisions at shock wave fronts (Snow & Hillier 2021; Snow et al. 2023). Moreover, adiabatic heating in shocks can become more important than heating due to dissipation of shocks by ion-neutral collisions (Arber et al. 2016; Zhang et al. 2021). Future studies would need to perform a thorough comparison of different dissipation mechanisms in the 1F and 2F models. Nevertheless, it must be taken into account that fast waves propagate at approximately the Alfvén speed in the βplasma < 1 and they are less likely to develop shock waves, which would make ion-neutral collision dissipation mechanisms important even for waves with larger amplitudes.
Acknowledgments
This work was supported by the European Research Council through the Consolidator Grant ERC-2017-CoG-771310-PI2FA and by Spanish Ministry of Science through the grant PID2021-127487NB-I00. M.M.G.M. acknowledges support from the Spanish Ministry of Science and Innovation through the grant CEX2019-0000920-S-20-1 of the Severo Ochoa Program. We thankfully acknowledge the resources of LaPalma Supercomputer, located at the Instituto de Astrofisica de Canarias.
References
- Arber, T. D., Brady, C. S., & Shelyag, S. 2016, ApJ, 817, 94 [Google Scholar]
- Bai, X.-N., & Stone, J. M. 2011, ApJ, 736, 144 [Google Scholar]
- Ballai, I. 2019, Front. Astron. Space Sci., 6, 39 [Google Scholar]
- Ballester, J. L., Alexeev, I., Collados, M., et al. 2018, Space Sci. Rev., 214 [Google Scholar]
- Beck, C., Khomenko, E., Rezaei, R., & Collados, M. 2009, A&A, 507, 453 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Benavides, S. J., & Flierl, G. R. 2020, J. Fluid Mech., 900, A28 [Google Scholar]
- Berenger, J.-P. 1994, J. Comput. Phys., 114, 185 [CrossRef] [Google Scholar]
- Braginskii, S. I. 1965, Rev. Plasma Phys., 1, 205 [Google Scholar]
- Brandenburg, A. 2019, MNRAS, 487, 2673 [NASA ADS] [CrossRef] [Google Scholar]
- Bray, R. J., & Loughhead, R. E. 1974, The solar chromosphere (London: Chapman and Hall) [Google Scholar]
- Cally, P. S. 2023, ApJ, 954, 85 [Google Scholar]
- Cally, P. S., & Gómez-Míguez, M. M. 2023, ApJ, 946, 108 [Google Scholar]
- Cally, P. S., & Khomenko, E. 2019, ApJ, 885, 58 [Google Scholar]
- Carbonell, M., Terradas, J., Oliver, R., & Ballester, J. L. 2006, A&A, 460, 573 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Chapman, S., & Cowling, T. G. 1970, The mathematical theory of non-uniform gases. an account of the kinetic theory of viscosity, thermal conduction and diffusion in gases, 3rd edn. (Cambridge: University Press) [Google Scholar]
- Cheung, M. C. M., & Cameron, R. H. 2012, ApJ, 750, 6 [NASA ADS] [CrossRef] [Google Scholar]
- de Pontieu, B., & Haerendel, G. 1998, A&A, 338, 729 [Google Scholar]
- Deubner, F.-L., & Gough, D. 1984, ARA&A, 22, 593 [NASA ADS] [CrossRef] [Google Scholar]
- Draine, B. T. 1986, MNRAS, 220, 133 [NASA ADS] [Google Scholar]
- Draine, B. T., Roberge, W. G., & Dalgarno, A. 1983, ApJ, 264, 485 [CrossRef] [Google Scholar]
- Forteza, P., Oliver, R., Ballester, J. L., & Khodachenko, M. L. 2006, A&A, 461, 731 [Google Scholar]
- Forteza, P., Oliver, R., & Ballester, J. L. 2008, A&A, 492, 223 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Gómez-Míguez, M. M., Martínez-Gómez, D., Khomenko, E., & Vitas, N. 2024, Philos. Trans. R. Soc. A: Math. Phys. Eng. Sci., 382, 20230228 [Google Scholar]
- Hunana, P. 2025, ApJS, 279, 6 [Google Scholar]
- Hunana, P., Tenerani, A., Zank, G. P., et al. 2019, J. Plasma Phys., 85, 205850602 [NASA ADS] [CrossRef] [Google Scholar]
- Hunana, P., Passot, T., Khomenko, E., et al. 2022, ApJS, 260, 26 [NASA ADS] [CrossRef] [Google Scholar]
- Jones, P. B. 1987, MNRAS, 228, 513 [Google Scholar]
- Kamaya, H., & Nishi, R. 1998, ApJ, 500, 257 [Google Scholar]
- Khodachenko, M. L., Arber, T. D., Rucker, H. O., & Hanslmeier, A. 2004, A&A, 422, 1073 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Khodachenko, M., Rucker, H., Oliver, R., Arber, T., & Hanslmeier, A. 2006, Adv. Space Res., 37, 447 [Google Scholar]
- Khomenko, E., & Cally, P. S. 2019, ApJ, 883, 179 [Google Scholar]
- Khomenko, E., & Collados, M. 2006, ApJ, 653, 739 [Google Scholar]
- Khomenko, E., & Collados, M. 2012a, ApJ, 747, 87 [Google Scholar]
- Khomenko, E., & Collados, M. 2012b, arXiv e-prints [arXiv:1202.2252] [Google Scholar]
- Khomenko, E., Collados, M., Díaz, A., & Vitas, N. 2014, Phys. Plasmas, 21, 092901 [Google Scholar]
- Khomenko, E., Vitas, N., Collados, M., & de Vicente, A. 2018, A&A, 618, A87 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Kulsrud, R., & Pearce, W. P. 1969, ApJ, 156, 445 [NASA ADS] [CrossRef] [Google Scholar]
- Kumar, N., & Roberts, B. 2003, Sol. Phys., 214, 241 [Google Scholar]
- Lamb, H. 1932, Hydrodynamics (New York: Dover publications) [Google Scholar]
- Landau, L. D., & Lifshitz, E. M. 1987, Fluid Mechanics (Institute of Physical Problems, U.S.S.R. Academy of Sciences), 6 [Google Scholar]
- Leake, J. E., Lukin, V. S., Linton, M. G., & Meier, E. T. 2012, ApJ, 760, 109 [Google Scholar]
- Leake, J. E., Lukin, V. S., & Linton, M. G. 2013, Phys. Plasmas, 20, 061202 [NASA ADS] [CrossRef] [Google Scholar]
- Leake, J. E., DeVore, C. R., Thayer, J. P., et al. 2014, Space Sci. Rev., 184, 107 [Google Scholar]
- Maneva, Y. G., Laguna, A. A., Lani, A., & Poedts, S. 2017, ApJ, 836, 197 [Google Scholar]
- Martínez-Gómez, D., Soler, R., & Terradas, J. 2017, ApJ, 837, 80 [CrossRef] [Google Scholar]
- Martínez-Gómez, D., Soler, R., & Terradas, J. 2018, ApJ, 856, 16 [Google Scholar]
- Martínez-Sykora, J., Pontieu, B. D., & Hansteen, V. 2012, ApJ, 753, 161 [CrossRef] [Google Scholar]
- Martínez-Sykora, J., Pontieu, B. D., Carlsson, M., & Hansteen, V. 2016, ApJ, 831, L1 [CrossRef] [Google Scholar]
- Martínez-Sykora, J., Leenaarts, J., De Pontieu, B., et al. 2020a, ApJ, 889, 95 [Google Scholar]
- Martínez-Sykora, J., Szydlarski, M., Hansteen, V. H., & De Pontieu, B. 2020b, ApJ, 900, 101 [CrossRef] [Google Scholar]
- Martínez-Sykora, J., de la Cruz Rodríguez, J., Gosic, M., et al. 2023, ApJ, 943, L14 [CrossRef] [Google Scholar]
- Meier, E. T. 2011, Ph.D. Thesis, University of Washington [Google Scholar]
- Meier, E. T., & Shumlak, U. 2012, Phys. Plasmas, 19, 072508 [NASA ADS] [CrossRef] [Google Scholar]
- Modestov, M., Khomenko, E., Vitas, N., et al. 2024, Sol. Phys., 299, 23 [NASA ADS] [CrossRef] [Google Scholar]
- Ni, L., Lukin, V. S., Murphy, N. A., & Lin, J. 2018, Physics of Plasmas, 25, 042903 [Google Scholar]
- Nóbrega-Siverio, D., Martínez-Sykora, J., Moreno-Insertis, F., & Carlsson, M. 2020a, A&A, 638, A79 [EDP Sciences] [Google Scholar]
- Nóbrega-Siverio, D., Moreno-Insertis, F., Martínez-Sykora, J., Carlsson, M., & Szydlarski, M. 2020b, A&A, 633, A66 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Osterbrock, D. E. 1961, ApJ, 134, 347 [NASA ADS] [CrossRef] [Google Scholar]
- Parchevsky, K. V., & Kosovichev, A. G. 2007, ApJ, 666, 547 [NASA ADS] [CrossRef] [Google Scholar]
- Piddington, J. H. 1956, MNRAS, 116, 314 [Google Scholar]
- Pinto, C., Galli, D., & Bacciotti, F. 2008, A&A, 484, 1 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Popescu Braileanu, B. 2020, Ph.D. Thesis, University of La Laguna [Google Scholar]
- Popescu Braileanu, B., & Keppens, R. 2021, A&A, 653, A131 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Popescu Braileanu, B., & Keppens, R. 2024, Phil. Trans. R. Soc. A: Math. Phys. Eng. Sci., 382, 20230217 [Google Scholar]
- Popescu Braileanu, B., Lukin, V. S., Khomenko, E., & de Vicente, Á. 2019a, A&A, 627, A25 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Popescu Braileanu, B., Lukin, V. S., Khomenko, E., & de Vicente, Á. 2019b, A&A, 630, A79 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Popescu Braileanu, B., Lukin, V. S., Khomenko, E., & de Vicente, Á. 2021, A&A, 646, A93 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Priest, E. 2014, Magnetohydrodynamics of the Sun (Cambridge University Press) [Google Scholar]
- Schunk, R. W. 1977, Rev. Geophys., 15, 429 [Google Scholar]
- Schunk, R., & Nagy, A. 2009, Ionospheres (Cambridge University Press) [Google Scholar]
- Schunker, H., & Cally, P. S. 2006, MNRAS, 372, 551 [Google Scholar]
- Shelyag, S., Khomenko, E., de Vicente, A., & Przybylski, D. 2016, ApJ, 819, L11 [Google Scholar]
- Snow, B., & Hillier, A. 2021, A&A, 645, A81 [EDP Sciences] [Google Scholar]
- Snow, B., Druett, M. K., & Hillier, A. 2023, MNRAS, 525, 4717 [Google Scholar]
- Soler, R. 2024, Phil. Trans. R. Soc. A: Math. Phys. Eng. Sci., 382, 20230223 [Google Scholar]
- Soler, R., Carbonell, M., & Ballester, J. L. 2013a, ApJS, 209, 16 [Google Scholar]
- Soler, R., Carbonell, M., Ballester, J. L., & Terradas, J. 2013b, ApJ, 767, 171 [NASA ADS] [CrossRef] [Google Scholar]
- Soler, R., Carbonell, M., & Ballester, J. L. 2015a, ApJ, 810, 146 [Google Scholar]
- Soler, R., Ballester, J. L., & Zaqarashvili, T. V. 2015b, A&A, 573, A79 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Song, P., & Vasyliūnas, V. M. 2011, J. Geophys. Res.: Space Phys., 116, n/a [NASA ADS] [CrossRef] [Google Scholar]
- Terradas, J., Molowny-Horas, R., Wiehr, E., et al. 2002, A&A, 393, 637 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Terradas, J., Carbonell, M., Oliver, R., & Ballester, J. L. 2005, A&A, 434, 741 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Tracy, E. R., Brizard, A. J., Richardson, A. S., & Kaufman, A. N. 2014, Ray Tracing and Beyond (Cambridge, UK: Cambridge University Press) [Google Scholar]
- Vernazza, J. E., Avrett, E. H., & Loeser, R. 1981, ApJS, 45, 635 [Google Scholar]
- Vranjes, J., & Krstic, P. S. 2013, A&A, 554, A22 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Walker, A. 2004, Magnetohydrodynamic Waves in Geospace: The Theory of ULF Waves and their Interaction with Energetic Particles in the Solar-Terrestrial Environment (CRC Press) [Google Scholar]
- Walker, A. D. M. 2014, Ann. Geophys., 32, 1495 [Google Scholar]
- Weinberg, S. 1962, Phys. Rev., 126, 1899 [Google Scholar]
- Wiegelmann, T., Thalmann, J. K., & Solanki, S. K. 2014, A&ARv, 22, 78 [Google Scholar]
- Zaqarashvili, T. V., Khodachenko, M. L., & Rucker, H. O. 2011a, A&A, 529, A82 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Zaqarashvili, T. V., Khodachenko, M. L., & Rucker, H. O. 2011b, A&A, 534, A93 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Zaqarashvili, T. V., Khodachenko, M. L., & Soler, R. 2013, A&A, 549, A113 [NASA ADS] [CrossRef] [EDP Sciences] [Google Scholar]
- Zhang, F., Poedts, S., Lani, A., Kuźma, B., & Murawski, K. 2021, ApJ, 911, 119 [NASA ADS] [CrossRef] [Google Scholar]
- Zweibel, E. G., & Brandenburg, A. 1997, ApJ, 478, 563 [Google Scholar]
Appendix A: Driver configuration
We provide a brief overview of the set-up for the driver located at the base of the atmosphere. This set-up closely resembles the one utilised by Popescu Braileanu et al. (2019a). Under photospheric conditions, a 1F solution effectively characterizes the waves in that region. We anticipate a strong coupling, indicating that w tends towards 0, so neutrals and charges can be assumed to move at the same velocity.
The most straightforward approach is to follow the 1F simulation driver. From the linear theory, ideal MHD solution
is shown to fulfil the following relations:
where we choose the Mach number M = 10−3 for all the simulations.
For the 2F simulation, the driver variables
are related as follows (for further details, see Popescu Braileanu et al. 2019b):
To prevent numerical noise during the early stages of the simulation, we introduce a smoothing function that gradually increases the wave amplitude until it reaches the desired value, M.
Appendix B: The heat flux at the centre of mass frame reference
The relations between the definitions of the variables in the 1F and 2F models are given by (see e.g. Appendix D in Khomenko et al. 2014),
where ρ,
and, p are, respectively, the density, stress tensor and thermal pressure for the centre of mass frame reference. In addition, we also introduce the heat flux, q.
To derive the 1F set of equations from the 2F equations, we proceed by summing up the equations for neutrals and charges and then we apply the definitions above. For the mass and momentum equations, adding (1a) with (1b) and (1c) with (1d) bring, respectively, (11a) and (11b). When we repeat the same process for the energy equation starting from (1e) and (1f), the total energy is found to be:
and trivially, the RHS of (11c) can be obtained. However, the sum of the flux terms in the energy equation leads to,
The combination of the flux terms (B.3a), (B.3b) and (B.3c) bring out the flux terms present in the 1F energy equation (11c) plus a group of terms which depend on wα. By comparing these terms with those in the definition of q (see (B.1d)), we find them to be the same. More in detail,
Therefore, despite our 2F model does not include a heating flux, the associated 1F does include it, but with qα = 0. This result reveals that the closures q = 0 and qα = 0 are not equivalent, and then they should be checked when comparing the results of both models.
Appendix C: Extended 1F model
If the contributions of G (Eq. (25)) and qw (Eq. (55)) are included in the set of 1F equations presented in section 2.2, the set of 1F equations reads as,
Keeping in mind the relations (for further details, see Eqs. (13a), (55) and, (23))
it follows,
Those are a particular case from the equations presented by, for instance, Zaqarashvili et al. (2011a), when the terms proportional to w2 and w3 are neglected.
Considering small perturbations for a homogeneous atmosphere, we obtain the following set of linear equations
where,
All Figures
![]() |
Fig. 1. Representation of the characteristic parameters of the atmosphere. In the top panel, the density of neutrals is in solid black line and the density of charges is in dashed-dotted line. Their scale is shown on the left axis. The right axis labels represent the neutral-charge (solid red line) and the charge-neutral (dashed-dotted red line) collision frequencies. The characteristic speeds are displayed in the bottom panel: the neutral (solid black line), charge (dashed line) and 1F (dashed-dotted green line) sound speeds and the 1F (solid yellow line) and charge (‘dashed-dot’ yellow line) Alfvén speeds. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 2. Groups of panels from top to bottom: comparison between the numerical solution of velocity, temperature and magnetic field perturbations for waves of period P = 1 s, 3 s and 5 s at 250 s after the start of the simulation. Solid red lines: Perturbations in the velocity, temperature of charges and perturbations in the magnetic field in the 2F model. Solid cyan lines: Same for neutrals in 2F model. Black dashed lines: Same for the 1F model. The equipartition layer βplasma = 1 is indicated with a grey dashed vertical line. |
| In the text | |
![]() |
Fig. 3. Comparison of the centre of mass velocity (u, cyan curves) and drift velocity (w, magenta curves) for the simulations represented in Fig. 2, at 250 s of simulated time. The values were computed from the 2F simulations. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 4. Left column: Sum of the 2F collisional heating terms (solid red line, see Eqs. (27b) and (27a)) and the 1F ambipolar heating term (black dashed line, see Eq. (29b))), at 190 s of simulated time. The factor NT (see Eq. (32)) is introduced in all the cases. Right column: Time-average temperature for the 1F and 2F models (solid and dashed lines, respectively). Different time intervals are represented with different colours. The vertical axis range is the same in all the panels. The 2F curves are computed from Eq. (34). From top to bottom, the rows refer to the 1 s, 3 s, and 5 s wave periods. The averaging time intervals are the same for the cases of 1 s and 5 s. We also include residuals (1F–2F) to better compare the differences between the models. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 5. Evolution of the average temperature increase at the heating peak as a function of time. Diamonds: P = 5 s; dots: P = 3 s; stars: P = 1 s. The 2F data points are represented in black and the 1F ones in red. |
| In the text | |
![]() |
Fig. 6. Comparison of wz2 for a linear (cyan line) and non-linear (magenta line) 2F simulations, at 250 s of simulated time. From top to bottom, the wave periods are P = 1, 3 and 5 s, respectively. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 7. Representation of the 1F wave energy flux contributions for the three wave periods studied in this work. From the top to the bottom, the wave periods are 1 s, 3 s, and 5 s, respectively. Blue line: Magnetic energy (Wm). Green line: Acoustic energy (Wac). Red line: Kinetic energy (WK). Black line: Total energy (WT). The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 8. Representation of the 2F wave energy flux contributions for the three wave periods studied in this work. From the top to the bottom in groups of two plots, the wave periods are 1 s, 3 s, and 5 s, respectively. Blue line: the magnetic energy (Wm). Green line: Acoustic energy (Wac, α). Red line: Kinetic energy (WK, α). Black line: Total energy (WT). The terms of the neutrals are shown in solid lines and terms for the charges in dashed lines. We split the terms WK, c and Wac, c in panels separated from neutrals due to the difference in scale. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 9. Residuals of the total wave energy flux (1F–2F). The results are computed for the different wave periods considered in this work. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 10. Vertical wave numbers for the 2F model as functions of height for all wave periods studied in this work. From top to bottom, the wave periods are 1 s, 3 s, and 5 s. Blue and green solid lines: upward and downward fast mode. Red and black solid lines: Upward and downward normal mode (different from the fast mode). The left column represents the real part and the right represents the imaginary part. The fast mode lines are multiplied by an arbitrary factor for the representation. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 11. Difference between the 2F and the 1F wave numbers relative to the 2F wave number. Left column: Calculations for the real part of kz; right column: same calculations, but for the imaginary part of kz. Only the upwards fast mode solution is represented. Solid black line: differences computed asumming the 1F model described in Section 2.2; dashed red line: differences computed extending the 1F for accounting the contributions of qw and G; dashed-dotted red line: differences computed extending the 1F for accounting the contributions of qw alone and G alone. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
![]() |
Fig. 12. Quality factors for the simulated wave periods for the 2F model. The horizontal grey line indicates the value |
| In the text | |
![]() |
Fig. 13. Estimator of the impact of inertial terms for the three wave periods considered in this work as function of the height. The vertical dashed line indicates the equipartition layer βplasma = 1. |
| In the text | |
Current usage metrics show cumulative count of Article Views (full-text article views including HTML views, PDF and ePub downloads, according to the available data) and Abstracts Views on Vision4Press platform.
Data correspond to usage on the plateform after 2015. The current usage metrics is available 48-96 hours after online publication and is updated daily on week days.
Initial download of the metrics may take a while.




![$$ \begin{aligned} \frac{\partial e_{\rm n}}{\partial t} + \nabla \cdot \left[e_{\rm n}\mathbf u _{\rm n} + \hat{p}_{\rm n} \cdot \mathbf u _{\rm n} \right]&= \rho _{\rm n} \mathbf g \cdot \mathbf u _{\rm n} + M_{\rm n}, \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq5.gif)
![$$ \begin{aligned} \frac{\partial e_{\rm c}}{\partial t} + \nabla \cdot \left[e_{\rm c} \mathbf u _{\rm c} + \left(\hat{p}_{\rm c} + \hat{p}_{\rm m}\right)\cdot \mathbf u _{\rm c} \right]&= \rho _{\rm c} \mathbf g \cdot \mathbf u _{\rm c} - M_{\rm n}, \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq6.gif)














![$$ \begin{aligned} \frac{\partial e}{\partial t} + \nabla \cdot \left[e \mathbf u + (\hat{p} + \hat{p}_{\rm m}) \cdot \mathbf u + \mathbf S ^* \right]&= \rho \mathbf g \cdot \mathbf u , \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq27.gif)

























































![$$ \begin{aligned} \frac{\partial ^2 u_{\rm c,z}}{\partial t^2}&= (c_{\rm sc}^2 + c_{\rm Ac}^2) \frac{\partial ^2 u_{\rm c,z}}{\partial z^2} + \frac{1}{\rho _{\rm c,0}}\frac{d}{dz}[(c_{\rm sc}^2 + c_{\rm Ac}^2)\rho _{\rm c,0}] \frac{\partial u_{\rm c,z}}{\partial z}\nonumber \\&\quad - \alpha _0 \rho _{\rm n,0}\frac{\partial }{\partial t}(u_{\rm c,z} - u_{\rm n,z}), \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq83.gif)















![$$ \begin{aligned} \det (\hat{D}_{\rm 2F})&= k_{\rm z}^4 - \left[\frac{\omega ^2}{c_{\rm sn}^2} + \frac{\omega ^2}{c_{\rm sc}^2 + c_{\rm Ac}^2} + i \omega \alpha _0 \left(\frac{\rho _{\rm c,0}}{c_{\rm sn}^2} + \frac{\rho _{\rm n,0}}{c_{\rm sc}^2 + c_{\rm Ac}^2}\right)\right]k_{\rm z}^2 \nonumber \\&\quad + \frac{\omega ^4}{c_{\rm sn}^2(c_{\rm sc}^2 + c_{\rm Ac}^2)} + i \omega ^3 \alpha _0 \left(\frac{\rho _{\rm n,0} + \rho _{\rm c,0}}{c_{\rm sn}^2(c_{\rm sc}^2 + c_{\rm Ac}^2)}\right) = 0,\end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq101.gif)
![$$ \begin{aligned} \det (\hat{D}_{\rm 1F})&= k_{\rm z}^4 - \left[\frac{\omega ^2}{c_{\rm s}^2} + i \frac{\omega }{\rho _0 \tilde{\eta }_{\rm A,0}}\left(\frac{1}{c_{\rm s}^2} + \frac{1}{c_{\rm A}^2}\right)\right]k_{\rm z}^2 + i \frac{\omega ^3}{c_{\rm s}^2 c_{\rm A}^2 \rho _0 \tilde{\eta }_{\rm A,0}} = 0. \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq102.gif)






![$$ \begin{aligned} k_{\rm z}^4 - (1 + \xi _{\rm c,0})^2\left[\frac{\omega ^2}{c_{\rm s}^2} + \frac{\omega ^2 \xi _{\rm c,0}^2 \tilde{\mu }_0^2}{c_{\rm A}^2}+ i \frac{\omega }{\rho _0 \tilde{\eta }_{\rm A,0}}\left(\frac{1}{c_{\rm s}^2} + \frac{1}{c_{\rm A}^2}\right)\right]k_{\rm z}^2 \nonumber \\ + i(1 + \xi _{\rm c,0})^2\frac{\omega ^3}{c_{\rm s}^2 c_{\rm A}^2 \rho _0 \tilde{\eta }_{\rm A,0}} = 0. \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq112.gif)
![$$ \begin{aligned} k_{\rm z}^4 - (1 + \xi _{\rm c,0})\left[\frac{\omega ^2}{c_{\rm s}^2} + i \frac{\omega }{\rho _0 \tilde{\eta }_{\rm A,0}}\left(\frac{1}{c_{\rm s}^2} + \frac{1}{c_{\rm A}^2}\right)\right]k_{\rm z}^2 \nonumber \\ + i(1 + \xi _{\rm c,0})\frac{\omega ^3}{c_{\rm s}^2 c_{\rm A}^2 \rho _0 \tilde{\eta }_{\rm A,0}} = 0. \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq114.gif)

![$$ \begin{aligned} Q_{\rm n} + Q_{\rm c}&= \frac{\tilde{\eta }_{\rm A}}{\xi _{\rm n}^2} [\xi _{\rm n}^2(\nabla \cdot \hat{p}_{\rm m})^2 + 2 \xi _{\rm n} \mathbf G \cdot (\nabla \cdot \hat{p}_{\rm m}) + G^2], \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq115.gif)
![$$ \begin{aligned} Q&= \frac{\tilde{\eta }_{\rm A}}{\xi _{\rm n}^2} [\xi _{\rm n}^2(\nabla \cdot \hat{p}_{\rm m})^2 + \xi _{\rm n} \mathbf G \cdot (\nabla \cdot \hat{p}_{\rm m})]. \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq116.gif)










![$$ \begin{aligned} \hat{p} = \sum _{\alpha \in \{ \mathrm{n,c}\}} [\hat{p}_\alpha + \rho _\alpha (\mathbf w _\alpha \otimes \mathbf w _\alpha )], \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq135.gif)






![$$ \begin{aligned} \frac{\partial e}{\partial t} + \nabla \cdot \left[e \mathbf u + (\hat{p} + \hat{p}_{\rm m}) \cdot \mathbf u + \mathbf S ^{*} + \mathbf q \right] = \rho \mathbf g \cdot \mathbf u . \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq143.gif)


![$$ \begin{aligned} \frac{\partial e}{\partial t} + \nabla \cdot \left[e \mathbf u + (\hat{p} + \hat{p}_{\rm m}) \cdot \mathbf u + \mathbf S ^{*} + \mathbf q _{\rm w}\right] = \rho \mathbf g \cdot \mathbf u , \end{aligned} $$](/articles/aa/full_html/2025/09/aa54637-25/aa54637-25-eq146.gif)









